LSM2104 Group Project

Weiwei’s Page (U052166X)

AY541809

1. FASTA format for AY541809

    Data retrieved from NCBI Genome

2. Blast Efflux Pump   http://sf01.bic.nus.edu.sg/blast/

 

                 Regular blast

                 Setting: CP000522, blastx, Efflux_pump, No filter. Expect 10, BLOSUM62,

                 Query genetic codes: baterial(11). Database genetic codes: baterial(11),

                 Frame shift penalty: No.  Graphical Overview. Descriptions/alignments:5000

                 Remark: Actually set Descriptions/alignments 50 is more than enough here.

                

Results: Total 26 hits.

Getting the detail for the hits from here: Blast results.xls   Blast results webpage

Acinetobacter baumannii plasmid pMAC