Switch to the new Pfam website

The new URL for this page is: http://pfam.sanger.ac.uk/search?tab=searchSequenceBlock

Please note that although this website will continue to be available until the next Pfam data release (release 23.0), it is no longer supported.

Please update your bookmarks to point to the URL above or, if you came here via a link on another website, please consider notifying the webmaster of that site that Pfam URLs must be changed.

[803 residues]
Trusted matches - domains scoring higher than the gathering threshold (A)

Domain Start End Bits Evalue Alignment Mode
Plug 45 152 64.70 2.6e-16 Align ls
TonB_dep_Rec 530 803 90.20 5.3e-24 Align ls


Matches to Pfam-B

Domain Start End Alignment
Pfam-B_6284 189 217 Align
Pfam-B_5540 344 425 Align


Potential matches - Domains with Evalues above the cutoff

Domain Start End Bits Evalue Alignment Mode
Legionella_OMP 1 29 3.30 0.73 Align fs
Carb_anhydrase 440 452 3.80 0.45 Align fs
A-2_8-polyST 590 618 2.10 0.54 Align fs
DUF479 663 675 12.10 0.0017 Align fs


Alignments of Pfam-A domains to HMMs

Format for fetching alignments to seed

Alignment of Plug vs UNKNOWN-QUERY/45-152

                   *->dledtpgsvsv..vtaedlekrpasslsdaLrrvPGvavvrgggggg
                      +l + + +vs + ++   l++r +++l+daL++  G++ +++ ggg+
  UNKNOWN-QU    45    ELLGKSLNVSNqfIDTSKLKQR-STTLGDALGTELGIH-SNQYGGGA 89   

                   s.isiRGfgssrvlilvDGvpi......gsvglssRIippeliervevlk
                   s ++iRG+ + r+++l ++  + + ++ + + +    + p+l++++e+++
  UNKNOWN-QU    90 SaPIIRGQEGKRIKVLQNNADVldmsnmSPDHAVT--VEPSLAKSIEIIR 137  

                   DGpssalyGagalgGv<-*
                    G+s++ly++++++Gv   
  UNKNOWN-QU   138 -GASTLLYSSNSAAGV    152

Alignment of TonB_dep_Rec vs UNKNOWN-QUERY/530-803

                   *->sPrlgltsykptddlglslyasygrgfraPslgels...........
                      s+ + +  +++++  +  l ++ ++  r P++ e+++ +    +++ 
  UNKNOWN-QU   530    SYAGTV-HWRFAP--NYILSLTGTHQERLPNAQEMYthgmhlatnsf 573  

                   .qgnpdLkpEtsdnyElGlkyrlgdgrgnVaddlnlslslFyndiknliv
                    +gn  L+ E+s+n+E++l y+ +         l++++s +y d++n+i+
  UNKNOWN-QU   574 eIGNRFLRKEKSNNLEISLAYKDDL--------LDYQISTYYYDFDNYIY 615  

                   svp.g.g...........................................
                    ++ ++  +++  ++  + + + ++ +  ++++  ++ ++ +++ + ++ 
  UNKNOWN-QU   616 LQTlNeVlgttkvrdqhtlrinhysqsaanfyglegnigyqfnsvyhgsl 665  

                   ..................................................
                   ++++  ++ ++  +    ++ +++  +     ++++ +    + +++   
  UNKNOWN-QU   666 fgdyvkgrltnlpdaviaydiwnreptlapqkdrytprlpparlgtrlka 715  

                   ..g.ga.g.l.l.y.gn.t.a.sn.gripgytlldlslsykfpkrgkkIp
                   ++  +++g++ + +   +++ +  +  ++gy +l+++l yk +  ++   
  UNKNOWN-QU   716 dfDeSLkGeIeYyRvFKqDnIsKFeQVTSGYNMLNMTLAYKNKLSHTE-- 763  

                   gMKmgRnwvaglrlslgvnNLfdkkyy.alspsgssggngstnykQgiaD
                              ++l++ +nNL+d+k y ++++ +                
  UNKNOWN-QU   764 -----------YDLFFKANNLLDQKVYaHETFLP---------------- 786  

                   TndyglpgrPWVkYlnyqpgRtfrlgltyrF<-*
                       ++p            gR+f+lgl+++F   
  UNKNOWN-QU   787 ----YIPQ----------IGRNFSLGLNLNF    803

Alignment of Legionella_OMP vs UNKNOWN-QUERY/1-29

                   *->mlsLKKtavAvlALGssAlFAGtmGPvCt<-*
                      ml+  K   A + LG+s +     GPv t   
  UNKNOWN-QU     1    MLNKSKLFLALITLGASKILLAAEGPVTT    29

Alignment of Carb_anhydrase vs UNKNOWN-QUERY/440-452

                   *->tQPLkgRvVrAsF<-*
                      tQ+L +R V ++F   
  UNKNOWN-QU   440    TQQLLNRNVTKNF    452

Alignment of A-2_8-polyST vs UNKNOWN-QUERY/590-618

                   *->lslhdKDKliWekIKndyysadkrillde<-*
                      +sl  KD l   +I  +yy  d++i+l     
  UNKNOWN-QU   590    ISLAYKDDLLDYQISTYYYDFDNYIYLQT    618

Alignment of DUF479 vs UNKNOWN-QUERY/663-675

                   *->GnLlgDFVkGdpe<-*
                      G+L+gD+VkG+++   
  UNKNOWN-QU   663    GSLFGDYVKGRLT    675

Alignments of Pfam-B domains to best-matching to Pfam-B sequence

Format for fetching alignments to Pfam-B families:

Query Query/189-217 matching Pfam-B_6284

      temp 189 GVTVGLSPRVALRAEGLYRNAGNYKTPHY 217
               GVTVGLSPRVALRAEGLYRNAGNYKTPHY
     Query 189 GVTVGLSPRVALRAEGLYRNAGNYKTPHY 217

Query Query/344-425 matching Pfam-B_5540

      temp 344 IDLNTRRYDMRGEFTQPFTGIDKIRTSLSYIDYFHNELEGDKITNFFKNT 393
               IDLNTRRYDMRGEFTQPFTGIDKIRTSLSYIDYFHNELEGDKITNFFKNT
     Query 344 IDLNTRRYDMRGEFTQPFTGIDKIRTSLSYIDYFHNELEGDKITNFFKNT 393

      temp 394 GKVGRIELSHQPLGELTGILGLQYLEQDNSAL 425
               GKVGRIELSHQPLGELTGILGLQYLEQDNSAL
     Query 394 GKVGRIELSHQPLGELTGILGLQYLEQDNSAL 425