Switch to the new Pfam website

The new URL for this page is: http://pfam.sanger.ac.uk/search?tab=searchSequenceBlock

Please note that although this website will continue to be available until the next Pfam data release (release 23.0), it is no longer supported.

Please update your bookmarks to point to the URL above or, if you came here via a link on another website, please consider notifying the webmaster of that site that Pfam URLs must be changed.

There are no Pfam-A domains higher than gathering threshold

[191 residues]
Potential matches - Domains with Evalues above the cutoff

Domain Start End Bits Evalue Alignment Mode
Rrf2 1 82 -47.80 0.57 Align ls
HTH_psq 3 33 7.40 0.3 Align fs
NUMOD1 5 24 11.10 0.044 Align fs
TrmB 7 26 5.70 0.7 Align fs
Ribosomal_L44 72 94 4.80 0.82 Align fs
Flavi_M 168 182 3.80 0.9 Align fs


Alignments of Pfam-A domains to HMMs

Format for fetching alignments to seed

Alignment of Rrf2 vs UNKNOWN-QUERY/1-82

                   *->MklstktdYAlhaLlyLAlhpgegpvtseeIAerqnispvyLekila
                      M                      + ++++e+++ + + ++ + + ++
  UNKNOWN-QU     1    M---------------------AK-LSLSEVSKKFHVDRSTIYRAVR 25   

                   kLrkaGLVkSvRGagGGYrLArppe.eItllDVvrAvEGplalvecgedt
                               G+     L+r+ +++  l++V+r++ +p++  + +e  
  UNKNOWN-QU    26 N-----------GR-----LSRSSDgQFDLAEVIRCFGEPEQTSQKIESS 59   

                   npnpgcpcginiqCvlr.vweraeeaiedvL<-*
                   +        ++++  ++++++ +e+++ ++    
  UNKNOWN-QU    60 K--------QEGDESTKkLIAHLENEVKKYQ    82

Alignment of HTH_psq vs UNKNOWN-QUERY/3-33

                   *->imSlrkAArkYGiPrSTLwlrrlrggyslkr<-*
                      ++Sl+  ++k+ + rST++  +++g+ s++    
  UNKNOWN-QU     3    KLSLSEVSKKFHVDRSTIYRAVRNGRLSRSS    33

Alignment of NUMOD1 vs UNKNOWN-QUERY/5-24

                   *->SireAAkaLgishstInkyl<-*
                      S++e +k++++++stI + +   
  UNKNOWN-QU     5    SLSEVSKKFHVDRSTIYRAV    24

Alignment of TrmB vs UNKNOWN-QUERY/7-26

                   *->reiaeesgvPrskvYevLrs<-*
                      +e++++  v+rs++Y+++r+   
  UNKNOWN-QU     7    SEVSKKFHVDRSTIYRAVRN    26

Alignment of Ribosomal_L44 vs UNKNOWN-QUERY/72-94

                   *->kHtlHkVeqyKkGKaSllawGkR<-*
                      +H + +V +y  + ++l+ +++R   
  UNKNOWN-QU    72    AHLENEVKKYQEREERLMQQIDR    94

Alignment of Flavi_M vs UNKNOWN-QUERY/168-182

                   *->SValpTHaqmgLetR<-*
                      SVa+p H   gL +R   
  UNKNOWN-QU   168    SVAVPQHKKRGLFGR    182