BLAST Search Results

BLASTX 2.2.11 [Jun-05-2005]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: /dbase/web_blast/db/Efflux_Pump.fasta 
           24,506 sequences; 14,206,867 total letters



Query= gi|126373843|gb|CP000523.1| Acinetobacter baumannii ATCC
17978 plasmid pAB2, complete sequence, 11302 bases, 1B1C checksum.
         (11,302 letters)

Distribution of 10 Blast Hits on the Query Sequence



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|1197656|gb|AAC60777.1| Gne [Yersinia enterocolitica (type 0:8)]     35   0.99  
gi|15667875|gb|AAL05545.1|AF408195_1 putative replication protei...    34   2.2   
gi|146346599|gb|EDK33135.1| Predicted transporter protein [Clost...    33   3.8   
gi|153953718|ref|YP_001394483.1| Predicted transporter protein [...    33   3.8   
gi|75702526|gb|ABA22202.1| Secretion protein HlyD [Anabaena vari...    33   6.4   
gi|75908801|ref|YP_323097.1| Secretion protein HlyD [Anabaena va...    33   6.4   
gi|154492566|ref|ZP_02032192.1| hypothetical protein PARMER_0220...    33   6.4   
gi|154087791|gb|EDN86836.1| hypothetical protein PARMER_02200 [P...    33   6.4   
gi|78171569|gb|ABB28665.1| peptidase, M50 family [Chlorobium chl...    32   8.4   
gi|78189370|ref|YP_379708.1| peptidase, M50 family [Chlorobium c...    32   8.4   

>gi|1197656|gb|AAC60777.1| Gne [Yersinia enterocolitica (type 0:8)]
          Length = 336

 Score = 35.4 bits (80), Expect = 0.99
 Identities = 17/57 (29%), Positives = 32/57 (56%)
 Frame = +1

Query: 4399 LVTGGAAGIGKASALILAQAGSDVMIADLNLDAAKHTAEEIKKLTGRNIEYVACNIL 4569
            L+TGGA  IG  + L L + G +V++ D  ++++  +   + K+ GR   +   +IL
Sbjct: 4    LITGGAGYIGSHTVLTLLEQGRNVVVLDNLINSSAESLARVSKICGRKPNFYHGDIL 60



>gi|15667875|gb|AAL05545.1|AF408195_1 putative replication protein
           [Enterococcus faecalis]
          Length = 187

 Score = 34.3 bits (77), Expect = 2.2
 Identities = 16/41 (39%), Positives = 27/41 (65%)
 Frame = +1

Query: 358 VPFITRLEEQFTKYELQQVSSLSSAYAIRLYELLIQWRSTG 480
           +P +  LEE + +Y LQQ + L S+Y+  ++ LL Q+R+ G
Sbjct: 119 LPLLNNLEE-WVRYSLQQFNELESSYSKTMFRLLKQYRTKG 158



>gi|146346599|gb|EDK33135.1| Predicted transporter protein [Clostridium
             kluyveri DSM 555]
          Length = 1044

 Score = 33.5 bits (75), Expect = 3.8
 Identities = 27/97 (27%), Positives = 47/97 (48%)
 Frame = -1

Query: 10162 LFN*LNYIYLILYKI*F**EV*FMGEKVKTYAVRLDPQVAEFYDQLANSEGIRTSKLFSK 9983
             L+N  N I   L K+     V  +G + K   ++LD    EFY       G+ TS L SK
Sbjct: 152   LYNESNNITDSLKKVEGVGNVSLLGTQQKQLIIKLDKAAVEFY-------GVNTSLLISK 204

Query: 9982  ILTNDFQSIAVKQQADRIEDLVNRLEKRIDDFEEDNN 9872
             + +++    A + + D + + V R+  +++D +E  N
Sbjct: 205   LQSDNVSFPAGQIKQDNLNETV-RIMSQLEDIDEIKN 240



>gi|153953718|ref|YP_001394483.1| Predicted transporter protein
             [Clostridium kluyveri DSM 555]
          Length = 1044

 Score = 33.5 bits (75), Expect = 3.8
 Identities = 27/97 (27%), Positives = 47/97 (48%)
 Frame = -1

Query: 10162 LFN*LNYIYLILYKI*F**EV*FMGEKVKTYAVRLDPQVAEFYDQLANSEGIRTSKLFSK 9983
             L+N  N I   L K+     V  +G + K   ++LD    EFY       G+ TS L SK
Sbjct: 152   LYNESNNITDSLKKVEGVGNVSLLGTQQKQLIIKLDKAAVEFY-------GVNTSLLISK 204

Query: 9982  ILTNDFQSIAVKQQADRIEDLVNRLEKRIDDFEEDNN 9872
             + +++    A + + D + + V R+  +++D +E  N
Sbjct: 205   LQSDNVSFPAGQIKQDNLNETV-RIMSQLEDIDEIKN 240



>gi|75702526|gb|ABA22202.1| Secretion protein HlyD [Anabaena
            variabilis ATCC 29413]
          Length = 400

 Score = 32.7 bits (73), Expect = 6.4
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
 Frame = +2

Query: 1124 QEGDE-STKKLIAHLENEVKKYQEREERLMQQIDRMQT----LIELKSVAPATAAPHQDA 1288
            +EGDE    +++A+LE+    Y      L Q +D++Q     L ++K+ A       Q A
Sbjct: 95   KEGDEVQAGQVLAYLED----YSRATSALEQALDKLQIAKIRLAQVKAGAKPGDIDAQKA 150

Query: 1289 TAC--DTKMPQHATTQQDTDNKKNNELNIAE 1375
            T    ++++     TQQ T N+ N ELN A+
Sbjct: 151  TVARLESQLKGEVATQQATINRINAELNNAQ 181



>gi|75908801|ref|YP_323097.1| Secretion protein HlyD [Anabaena
            variabilis ATCC 29413]
          Length = 400

 Score = 32.7 bits (73), Expect = 6.4
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
 Frame = +2

Query: 1124 QEGDE-STKKLIAHLENEVKKYQEREERLMQQIDRMQT----LIELKSVAPATAAPHQDA 1288
            +EGDE    +++A+LE+    Y      L Q +D++Q     L ++K+ A       Q A
Sbjct: 95   KEGDEVQAGQVLAYLED----YSRATSALEQALDKLQIAKIRLAQVKAGAKPGDIDAQKA 150

Query: 1289 TAC--DTKMPQHATTQQDTDNKKNNELNIAE 1375
            T    ++++     TQQ T N+ N ELN A+
Sbjct: 151  TVARLESQLKGEVATQQATINRINAELNNAQ 181



>gi|154492566|ref|ZP_02032192.1| hypothetical protein PARMER_02200
            [Parabacteroides merdae ATCC 43184]
          Length = 1042

 Score = 32.7 bits (73), Expect = 6.4
 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
 Frame = +2

Query: 7496 HTTYLDTQQLLNRNVTKNFSVFGLEKYNWNDFTF---ELGARIEKQKVSMDYDI--EKIK 7660
            H   L+   +L +++ K  +V  +E Y++ND +    EL   ++   V   +D+   K+ 
Sbjct: 57   HQVELEVTDVLEKSIRKMDNVDNVESYSFNDLSLIQVELLTTVKDDDVEQHWDLLRRKVN 116

Query: 7661 DSMKPWPNKYNSPYVE 7708
            D+    P+  N+P V+
Sbjct: 117  DASALLPSGANTPIVQ 132



>gi|154087791|gb|EDN86836.1| hypothetical protein PARMER_02200
            [Parabacteroides merdae ATCC 43184]
          Length = 1042

 Score = 32.7 bits (73), Expect = 6.4
 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
 Frame = +2

Query: 7496 HTTYLDTQQLLNRNVTKNFSVFGLEKYNWNDFTF---ELGARIEKQKVSMDYDI--EKIK 7660
            H   L+   +L +++ K  +V  +E Y++ND +    EL   ++   V   +D+   K+ 
Sbjct: 57   HQVELEVTDVLEKSIRKMDNVDNVESYSFNDLSLIQVELLTTVKDDDVEQHWDLLRRKVN 116

Query: 7661 DSMKPWPNKYNSPYVE 7708
            D+    P+  N+P V+
Sbjct: 117  DASALLPSGANTPIVQ 132



>gi|78171569|gb|ABB28665.1| peptidase, M50 family [Chlorobium
            chlorochromatii CaD3]
          Length = 720

 Score = 32.3 bits (72), Expect = 8.4
 Identities = 42/186 (22%), Positives = 72/186 (38%), Gaps = 13/186 (6%)
 Frame = +2

Query: 8870 ANYWGIGFELLSLGIAAIYLFIRHFNFRLFNFN----INRYTIPLTLIFI-----LTADI 9022
            A YW +  E     +A   +F+   +  LFN N    ++ Y I   LI I        + 
Sbjct: 275  AIYWALSGEGALHSLAYNVMFVASISTLLFNINPLLRLDGYYILSDLIDIPNLHNRAVEH 334

Query: 9023 IASLYDYLSFNFFSILPKKVNTDNIDFSWSVDFIFYSLLNGFYEEFFFLGILFFISKKYY 9202
            +  L +   F++    P   N         ++   Y +L+  Y+   FLGI  F++ K+ 
Sbjct: 335  LKYLLERYVFHYSGATPVAKNRRE-----EIELTLYGVLSSIYKVVIFLGITLFVADKWL 389

Query: 9203 ---PIMYIYSLLIRFSFHTYQGISDALAITTLGIVFIIFRQRFYSLIPFML-AHAFFDVF 9370
                ++ I  ++  F    Y+ +            ++ F  R YS  P +  A A F + 
Sbjct: 390  ILGTLLAITGVVTGFFLPLYRFVR-----------YLFFDARLYSCRPRVASATALFLLI 438

Query: 9371 GLGVLG 9388
             L V G
Sbjct: 439  FLVVTG 444



>gi|78189370|ref|YP_379708.1| peptidase, M50 family [Chlorobium
            chlorochromatii CaD3]
          Length = 720

 Score = 32.3 bits (72), Expect = 8.4
 Identities = 42/186 (22%), Positives = 72/186 (38%), Gaps = 13/186 (6%)
 Frame = +2

Query: 8870 ANYWGIGFELLSLGIAAIYLFIRHFNFRLFNFN----INRYTIPLTLIFI-----LTADI 9022
            A YW +  E     +A   +F+   +  LFN N    ++ Y I   LI I        + 
Sbjct: 275  AIYWALSGEGALHSLAYNVMFVASISTLLFNINPLLRLDGYYILSDLIDIPNLHNRAVEH 334

Query: 9023 IASLYDYLSFNFFSILPKKVNTDNIDFSWSVDFIFYSLLNGFYEEFFFLGILFFISKKYY 9202
            +  L +   F++    P   N         ++   Y +L+  Y+   FLGI  F++ K+ 
Sbjct: 335  LKYLLERYVFHYSGATPVAKNRRE-----EIELTLYGVLSSIYKVVIFLGITLFVADKWL 389

Query: 9203 ---PIMYIYSLLIRFSFHTYQGISDALAITTLGIVFIIFRQRFYSLIPFML-AHAFFDVF 9370
                ++ I  ++  F    Y+ +            ++ F  R YS  P +  A A F + 
Sbjct: 390  ILGTLLAITGVVTGFFLPLYRFVR-----------YLFFDARLYSCRPRVASATALFLLI 438

Query: 9371 GLGVLG 9388
             L V G
Sbjct: 439  FLVVTG 444




  Database: /dbase/web_blast/db/Efflux_Pump.fasta
    Posted date:  Aug 12, 2007 10:30 PM
  Number of letters in database: 14,206,867
  Number of sequences in database:  24,506
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 230,538,134
Number of Sequences: 24506
Number of extensions: 4579064
Number of successful extensions: 12790
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12775
length of database: 14,206,867
effective HSP length: 121
effective length of database: 11,241,641
effective search space used: 40975781445
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)