BLAST Search Results

BLASTX 2.2.11 [Jun-05-2005]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: /dbase/web_blast/db/Efflux_Pump.fasta 
           24,506 sequences; 14,206,867 total letters



Query= 
         (9540 letters)

Distribution of 26 Blast Hits on the Query Sequence



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|15667875|gb|AAL05545.1|AF408195_1 putative replication protei...    37   0.29  
gi|149822944|gb|EDM82189.1| RND family efflux transporter [Limno...    35   1.4   
gi|149928359|ref|ZP_01916600.1| RND family efflux transporter [L...    35   1.4   
gi|88781368|gb|EAR12546.1| putative transport-related, membrane ...    34   1.9   
gi|88802510|ref|ZP_01118037.1| putative transport-related, membr...    34   1.9   
gi|146156609|gb|ABQ07463.1| heavy metal efflux pump, CzcA family...    34   1.9   
gi|146302191|ref|YP_001196782.1| heavy metal efflux pump, CzcA f...    34   1.9   
gi|91202335|emb|CAJ75395.1| strongly similar to cobalt-zinc-cadm...    34   2.4   
gi|17742226|gb|AAL44605.1| AcrB/AcrD/AcrF family protein [Agroba...    33   5.4   
gi|15889959|ref|NP_355640.1| hypothetical protein AGR_C_4904 [Ag...    33   5.4   
gi|17936581|ref|NP_533371.1| HlyD family secretion protein [Agro...    33   5.4   
gi|17937500|ref|NP_534289.1| AcrB/AcrD/AcrF family protein [Agro...    33   5.4   
gi|15159504|gb|AAK89612.1| AGR_L_2075p [Agrobacterium tumefacien...    33   5.4   
gi|15891155|ref|NP_356827.1| hypothetical protein AGR_L_2075 [Ag...    33   5.4   
gi|110682605|gb|ABG85975.1| bacteriocin ABC transporter, bacteri...    32   7.0   
gi|146396754|gb|ABQ25387.1| secretion protein HlyD family protei...    32   7.0   
gi|110802104|ref|YP_698405.1| bacteriocin ABC transporter, bacte...    32   7.0   
gi|148263254|ref|YP_001229960.1| secretion protein HlyD family p...    32   7.0   
gi|77965451|gb|ABB06831.1| Drug resistance transporter EmrB/QacA...    32   7.0   
gi|78064706|ref|YP_367475.1| Drug resistance transporter EmrB/Qa...    32   7.0   
gi|126389110|gb|ABO13608.1| RND divalent metal cation efflux tra...    32   7.0   
gi|126643226|ref|YP_001086210.1| RND divalent metal cation efflu...    32   7.0   
gi|89050988|gb|EAR56452.1| chain length regulator (capsular poly...    32   9.2   
gi|89073278|ref|ZP_01159808.1| chain length regulator (capsular ...    32   9.2   
gi|134137335|gb|ABO53078.1| drug resistance transporter, EmrB/Qa...    32   9.2   
gi|134294178|ref|YP_001117913.1| drug resistance transporter, Em...    32   9.2   

>gi|15667875|gb|AAL05545.1|AF408195_1 putative replication protein
           [Enterococcus faecalis]
          Length = 187

 Score = 37.0 bits (84), Expect = 0.29
 Identities = 18/41 (43%), Positives = 28/41 (68%)
 Frame = +2

Query: 404 VPLITRLEENFTKYELQQVSRLSSSYAIRLYELLIQWRSAG 526
           +PL+  LEE + +Y LQQ + L SSY+  ++ LL Q+R+ G
Sbjct: 119 LPLLNNLEE-WVRYSLQQFNELESSYSKTMFRLLKQYRTKG 158



>gi|149822944|gb|EDM82189.1| RND family efflux transporter
            [Limnobacter sp. MED105]
          Length = 840

 Score = 34.7 bits (78), Expect = 1.4
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
 Frame = +2

Query: 4220 SENGHSESMVELADLYTRADSGIEVNIKKALELREK--AAKLGNKKAMRSLSVMYRDGIG 4393
            S NG   S  +L ++YT +D+G  V +   ++++E+  AA+L      R++ +     IG
Sbjct: 554  SSNGSLNSPFDLLNIYTSSDTGQLVPLASMIKVQERGVAAELDRHAQRRAVEL----NIG 609

Query: 4394 IPKNTDL 4414
            IP  TDL
Sbjct: 610  IPPGTDL 616



>gi|149928359|ref|ZP_01916600.1| RND family efflux transporter
            [Limnobacter sp. MED105]
          Length = 840

 Score = 34.7 bits (78), Expect = 1.4
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
 Frame = +2

Query: 4220 SENGHSESMVELADLYTRADSGIEVNIKKALELREK--AAKLGNKKAMRSLSVMYRDGIG 4393
            S NG   S  +L ++YT +D+G  V +   ++++E+  AA+L      R++ +     IG
Sbjct: 554  SSNGSLNSPFDLLNIYTSSDTGQLVPLASMIKVQERGVAAELDRHAQRRAVEL----NIG 609

Query: 4394 IPKNTDL 4414
            IP  TDL
Sbjct: 610  IPPGTDL 616



>gi|88781368|gb|EAR12546.1| putative transport-related, membrane
            protein [Polaribacter irgensii 23-P]
          Length = 1471

 Score = 34.3 bits (77), Expect = 1.9
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 15/90 (16%)
 Frame = +3

Query: 5814 LHLDSGTLTPLLKRMETS---GLINRSRDPNDERRVLISLKDKGRDLSAEAEKIPKELTK 5984
            + L SG   PL +  + S   G +  SRD N  RRV I +  +GRD+    E+I ++L  
Sbjct: 802  IDLPSGNQVPLKEVADISYKPGPMQISRD-NTYRRVSIGVNVRGRDVKTMVEEIQQKLET 860

Query: 5985 NIE------------FDNLNQLRDELKVLV 6038
             ++            F+NL +  D L ++V
Sbjct: 861  EVQLPSGYYLTYGGSFENLQRATDRLMIVV 890



>gi|88802510|ref|ZP_01118037.1| putative transport-related, membrane
            protein [Polaribacter irgensii 23-P]
          Length = 1471

 Score = 34.3 bits (77), Expect = 1.9
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 15/90 (16%)
 Frame = +3

Query: 5814 LHLDSGTLTPLLKRMETS---GLINRSRDPNDERRVLISLKDKGRDLSAEAEKIPKELTK 5984
            + L SG   PL +  + S   G +  SRD N  RRV I +  +GRD+    E+I ++L  
Sbjct: 802  IDLPSGNQVPLKEVADISYKPGPMQISRD-NTYRRVSIGVNVRGRDVKTMVEEIQQKLET 860

Query: 5985 NIE------------FDNLNQLRDELKVLV 6038
             ++            F+NL +  D L ++V
Sbjct: 861  EVQLPSGYYLTYGGSFENLQRATDRLMIVV 890



>gi|146156609|gb|ABQ07463.1| heavy metal efflux pump, CzcA family
            [Flavobacterium johnsoniae UW101]
          Length = 1446

 Score = 34.3 bits (77), Expect = 1.9
 Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 14/90 (15%)
 Frame = +3

Query: 5811 ILHLDSGTLTPL--LKRMETSGLINRSRDPNDERRVLISLKDKGRDLSAEAEKIPKELTK 5984
            ++ + SG   PL  L  ++     N+ +  N +RR+++    KGRD+ +  +++  ++  
Sbjct: 793  LIPIPSGNQIPLSQLAEVQIKDGPNQIQRENTQRRIIVGFNIKGRDVQSIVQELQAKVNA 852

Query: 5985 NIE------------FDNLNQLRDELKVLV 6038
             I+            F+NLNQ +  L V V
Sbjct: 853  QIKLPAGYSITYGGSFENLNQAKSRLMVAV 882



>gi|146302191|ref|YP_001196782.1| heavy metal efflux pump, CzcA family
            [Flavobacterium johnsoniae UW101]
          Length = 1446

 Score = 34.3 bits (77), Expect = 1.9
 Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 14/90 (15%)
 Frame = +3

Query: 5811 ILHLDSGTLTPL--LKRMETSGLINRSRDPNDERRVLISLKDKGRDLSAEAEKIPKELTK 5984
            ++ + SG   PL  L  ++     N+ +  N +RR+++    KGRD+ +  +++  ++  
Sbjct: 793  LIPIPSGNQIPLSQLAEVQIKDGPNQIQRENTQRRIIVGFNIKGRDVQSIVQELQAKVNA 852

Query: 5985 NIE------------FDNLNQLRDELKVLV 6038
             I+            F+NLNQ +  L V V
Sbjct: 853  QIKLPAGYSITYGGSFENLNQAKSRLMVAV 882



>gi|91202335|emb|CAJ75395.1| strongly similar to cobalt-zinc-cadmium
            resistance protein CzcA [Candidatus Kuenenia
            stuttgartiensis]
          Length = 1050

 Score = 33.9 bits (76), Expect = 2.4
 Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 15/112 (13%)
 Frame = +3

Query: 5826 SGTLTPLLKRMETS---GLINRSRDPNDERRVLISLKDKGRDLSAEAEKIPKELTKNIE- 5993
            SG   PL +  + S   G    SR  N +RR+++    +GRD+ +   +  K++ +N+E 
Sbjct: 808  SGVRVPLSQLADISVVEGPAQISRQ-NGKRRIVVECNVRGRDIGSFVAEAQKKIQENVEL 866

Query: 5994 -----------FDNLNQLRDELKVLVNLLSERI*DLLISDNGSLFTFKNQLV 6116
                       F+N+ Q R  L V+V +    I  LL +   S  +F+N ++
Sbjct: 867  PAGYYLNWGGQFENMQQARKRLAVVVPIAMGLIFILLYT---SFNSFRNAIL 915



>gi|17742226|gb|AAL44605.1| AcrB/AcrD/AcrF family protein
            [Agrobacterium tumefaciens str. C58]
          Length = 1023

 Score = 32.7 bits (73), Expect = 5.4
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
 Frame = +3

Query: 5871 LINRSRDPNDERRVLIS--LKDKGRDLSAEAEKIPKELTKNIEFDNLNQLRDELKVLVNL 6044
            L N   D N+  RV+    L+DK R L   +E I   +   +E   + Q+RD++  LVN+
Sbjct: 692  LSNLVMDWNEPTRVVKVDVLQDKARQLGVSSEDIANAMNSIVEGSTVTQVRDDI-YLVNV 750

Query: 6045 LSERI*DLLISDNGSLFTFKN 6107
            ++       +++ GS+ T +N
Sbjct: 751  VAR----AQLAERGSIETLQN 767



>gi|15889959|ref|NP_355640.1| hypothetical protein AGR_C_4904
            [Agrobacterium tumefaciens str. C58]
          Length = 437

 Score = 32.7 bits (73), Expect = 5.4
 Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 15/149 (10%)
 Frame = +1

Query: 1057 MKSLTVLELSKLYNINRQTIYNNIKKGILSKNSD---NKIDLAEAIRVFGEPVQKQS--- 1218
            + +LT  + +K +  + Q ++N+ +  ++         K+ LA+  R     V+      
Sbjct: 130  LTALTSSKSAKTFIDSEQNLFNSRRNALIGMKKQLATRKLQLADEARGLDVQVEATENEL 189

Query: 1219 --VKETVKVDSPTSAEVLLLRQQIDLLKNQLDDAKNRESFY-QNQIETMQRLLEAPKTNT 1389
              VKE V        + L+  Q+++LLK QL + + ++  Y   + +T+ +L E      
Sbjct: 190  AIVKEDVSKTDELLKKGLVTLQRLNLLKRQLSNLEGQQGQYIAARAQTVGKLSELDLQLL 249

Query: 1390 TQSDDPGS------TQAESTVEEKEDVIA 1458
               +D  S      T  E+TV E E+ +A
Sbjct: 250  QLDEDRKSEVTKDLTSIEATVAEYEERLA 278



>gi|17936581|ref|NP_533371.1| HlyD family secretion protein
            [Agrobacterium tumefaciens str. C58]
          Length = 437

 Score = 32.7 bits (73), Expect = 5.4
 Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 15/149 (10%)
 Frame = +1

Query: 1057 MKSLTVLELSKLYNINRQTIYNNIKKGILSKNSD---NKIDLAEAIRVFGEPVQKQS--- 1218
            + +LT  + +K +  + Q ++N+ +  ++         K+ LA+  R     V+      
Sbjct: 130  LTALTSSKSAKTFIDSEQNLFNSRRNALIGMKKQLATRKLQLADEARGLDVQVEATENEL 189

Query: 1219 --VKETVKVDSPTSAEVLLLRQQIDLLKNQLDDAKNRESFY-QNQIETMQRLLEAPKTNT 1389
              VKE V        + L+  Q+++LLK QL + + ++  Y   + +T+ +L E      
Sbjct: 190  AIVKEDVSKTDELLKKGLVTLQRLNLLKRQLSNLEGQQGQYIAARAQTVGKLSELDLQLL 249

Query: 1390 TQSDDPGS------TQAESTVEEKEDVIA 1458
               +D  S      T  E+TV E E+ +A
Sbjct: 250  QLDEDRKSEVTKDLTSIEATVAEYEERLA 278



>gi|17937500|ref|NP_534289.1| AcrB/AcrD/AcrF family protein
            [Agrobacterium tumefaciens str. C58]
          Length = 1023

 Score = 32.7 bits (73), Expect = 5.4
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
 Frame = +3

Query: 5871 LINRSRDPNDERRVLIS--LKDKGRDLSAEAEKIPKELTKNIEFDNLNQLRDELKVLVNL 6044
            L N   D N+  RV+    L+DK R L   +E I   +   +E   + Q+RD++  LVN+
Sbjct: 692  LSNLVMDWNEPTRVVKVDVLQDKARQLGVSSEDIANAMNSIVEGSTVTQVRDDI-YLVNV 750

Query: 6045 LSERI*DLLISDNGSLFTFKN 6107
            ++       +++ GS+ T +N
Sbjct: 751  VAR----AQLAERGSIETLQN 767



>gi|15159504|gb|AAK89612.1| AGR_L_2075p [Agrobacterium tumefaciens
            str. C58]
          Length = 1023

 Score = 32.7 bits (73), Expect = 5.4
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
 Frame = +3

Query: 5871 LINRSRDPNDERRVLIS--LKDKGRDLSAEAEKIPKELTKNIEFDNLNQLRDELKVLVNL 6044
            L N   D N+  RV+    L+DK R L   +E I   +   +E   + Q+RD++  LVN+
Sbjct: 692  LSNLVMDWNEPTRVVKVDVLQDKARQLGVSSEDIANAMNSIVEGSTVTQVRDDI-YLVNV 750

Query: 6045 LSERI*DLLISDNGSLFTFKN 6107
            ++       +++ GS+ T +N
Sbjct: 751  VAR----AQLAERGSIETLQN 767



>gi|15891155|ref|NP_356827.1| hypothetical protein AGR_L_2075
            [Agrobacterium tumefaciens str. C58]
          Length = 1023

 Score = 32.7 bits (73), Expect = 5.4
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
 Frame = +3

Query: 5871 LINRSRDPNDERRVLIS--LKDKGRDLSAEAEKIPKELTKNIEFDNLNQLRDELKVLVNL 6044
            L N   D N+  RV+    L+DK R L   +E I   +   +E   + Q+RD++  LVN+
Sbjct: 692  LSNLVMDWNEPTRVVKVDVLQDKARQLGVSSEDIANAMNSIVEGSTVTQVRDDI-YLVNV 750

Query: 6045 LSERI*DLLISDNGSLFTFKN 6107
            ++       +++ GS+ T +N
Sbjct: 751  VAR----AQLAERGSIETLQN 767



>gi|110682605|gb|ABG85975.1| bacteriocin ABC transporter,
            bacteriocin-binding protein, putative [Clostridium
            perfringens SM101]
          Length = 500

 Score = 32.3 bits (72), Expect = 7.0
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +3

Query: 8475 EKYNEIHSTLYLPEPKLGVGQQNATAEYLAQIQ-KIREHNQQERELEERQKQLDQQHE 8645
            +  +++ S +   +    + +       LAQI+ KI  +NQ+++ELEE +KQ++Q  E
Sbjct: 296  QSLSKLDSNISSLDESANIAKDKNKTTVLAQIEEKININNQKKKELEENKKQIEQSIE 353



>gi|146396754|gb|ABQ25387.1| secretion protein HlyD family protein
            [Geobacter uraniumreducens Rf4]
          Length = 354

 Score = 32.3 bits (72), Expect = 7.0
 Identities = 17/42 (40%), Positives = 27/42 (64%)
 Frame = +1

Query: 3316 MADELLLESQLHLIREELEISQKELAATLGIKQPSLSAIENR 3441
            +A+E  LE++LH   EEL++  KELA T+ ++ P    + NR
Sbjct: 181  LAEERRLEAELHQQEEELKLLAKELADTV-VRSPITGEVGNR 221



>gi|110802104|ref|YP_698405.1| bacteriocin ABC transporter,
            bacteriocin-binding protein, putative [Clostridium
            perfringens SM101]
          Length = 500

 Score = 32.3 bits (72), Expect = 7.0
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +3

Query: 8475 EKYNEIHSTLYLPEPKLGVGQQNATAEYLAQIQ-KIREHNQQERELEERQKQLDQQHE 8645
            +  +++ S +   +    + +       LAQI+ KI  +NQ+++ELEE +KQ++Q  E
Sbjct: 296  QSLSKLDSNISSLDESANIAKDKNKTTVLAQIEEKININNQKKKELEENKKQIEQSIE 353



>gi|148263254|ref|YP_001229960.1| secretion protein HlyD family
            protein [Geobacter uraniumreducens Rf4]
          Length = 354

 Score = 32.3 bits (72), Expect = 7.0
 Identities = 17/42 (40%), Positives = 27/42 (64%)
 Frame = +1

Query: 3316 MADELLLESQLHLIREELEISQKELAATLGIKQPSLSAIENR 3441
            +A+E  LE++LH   EEL++  KELA T+ ++ P    + NR
Sbjct: 181  LAEERRLEAELHQQEEELKLLAKELADTV-VRSPITGEVGNR 221



>gi|77965451|gb|ABB06831.1| Drug resistance transporter EmrB/QacA
            subfamily [Burkholderia sp. 383]
          Length = 520

 Score = 32.3 bits (72), Expect = 7.0
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -1

Query: 8652 KNIHVVDLIAFGVLRVLVLAGCVL*FFGFGRDIPLSHFVVQRLVLALEGIAC 8497
            +N+H +DL        +V AG  +    F  D+P +H ++ RLV  + G+AC
Sbjct: 337  RNMHRLDLRMVASFAFIVFAGVSIWNSTFTLDVPFNHVILPRLVQGI-GVAC 387



>gi|78064706|ref|YP_367475.1| Drug resistance transporter EmrB/QacA
            subfamily [Burkholderia sp. 383]
          Length = 520

 Score = 32.3 bits (72), Expect = 7.0
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -1

Query: 8652 KNIHVVDLIAFGVLRVLVLAGCVL*FFGFGRDIPLSHFVVQRLVLALEGIAC 8497
            +N+H +DL        +V AG  +    F  D+P +H ++ RLV  + G+AC
Sbjct: 337  RNMHRLDLRMVASFAFIVFAGVSIWNSTFTLDVPFNHVILPRLVQGI-GVAC 387



>gi|126389110|gb|ABO13608.1| RND divalent metal cation efflux
            transporter [Acinetobacter baumannii ATCC 17978]
          Length = 1023

 Score = 32.3 bits (72), Expect = 7.0
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 15/111 (13%)
 Frame = +3

Query: 5790 SVGDLGQI-LHLDSGTLTPL---LKRMETSGLINRSRDPNDERRVLISLKDKGRDLSAEA 5957
            ++ +L Q+ + L +G L  L    K   TSGL    R+ N +RRV+I+   +GRDL +  
Sbjct: 766  TIQNLAQLPIQLPNGGLIQLQDVAKVERTSGLNQVGRE-NGKRRVIITANVEGRDLGSFV 824

Query: 5958 EKIPKELTKNI-----------EFDNLNQLRDELKVLVNLLSERI*DLLIS 6077
            +++   L K             +F+NL      +K++V L    I  LL++
Sbjct: 825  QELRTTLAKEQLPAGYWLEYGGQFENLASAAARMKIVVPLALAMIFILLMA 875



>gi|126643226|ref|YP_001086210.1| RND divalent metal cation efflux
            transporter [Acinetobacter baumannii ATCC 17978]
          Length = 1023

 Score = 32.3 bits (72), Expect = 7.0
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 15/111 (13%)
 Frame = +3

Query: 5790 SVGDLGQI-LHLDSGTLTPL---LKRMETSGLINRSRDPNDERRVLISLKDKGRDLSAEA 5957
            ++ +L Q+ + L +G L  L    K   TSGL    R+ N +RRV+I+   +GRDL +  
Sbjct: 766  TIQNLAQLPIQLPNGGLIQLQDVAKVERTSGLNQVGRE-NGKRRVIITANVEGRDLGSFV 824

Query: 5958 EKIPKELTKNI-----------EFDNLNQLRDELKVLVNLLSERI*DLLIS 6077
            +++   L K             +F+NL      +K++V L    I  LL++
Sbjct: 825  QELRTTLAKEQLPAGYWLEYGGQFENLASAAARMKIVVPLALAMIFILLMA 875



>gi|89050988|gb|EAR56452.1| chain length regulator (capsular
            polysaccharide biosynthesis) [Photobacterium sp. SKA34]
          Length = 718

 Score = 32.0 bits (71), Expect = 9.2
 Identities = 16/49 (32%), Positives = 30/49 (61%)
 Frame = -1

Query: 9219 LQKSKSNSEFASLISFLYSLRST*MQIKSVRTLRDALYLSLSSKGEFVI 9073
            L+K+K++SEF      L  L    + I++++ LR +LY S+S+ G  ++
Sbjct: 483  LKKNKNSSEFNKKGMLLACLYPNDLAIEAIKLLRTSLYFSMSTAGNNIL 531



>gi|89073278|ref|ZP_01159808.1| chain length regulator (capsular
            polysaccharide biosynthesis) [Photobacterium sp. SKA34]
          Length = 718

 Score = 32.0 bits (71), Expect = 9.2
 Identities = 16/49 (32%), Positives = 30/49 (61%)
 Frame = -1

Query: 9219 LQKSKSNSEFASLISFLYSLRST*MQIKSVRTLRDALYLSLSSKGEFVI 9073
            L+K+K++SEF      L  L    + I++++ LR +LY S+S+ G  ++
Sbjct: 483  LKKNKNSSEFNKKGMLLACLYPNDLAIEAIKLLRTSLYFSMSTAGNNIL 531



>gi|134137335|gb|ABO53078.1| drug resistance transporter, EmrB/QacA
            subfamily [Burkholderia vietnamiensis G4]
          Length = 520

 Score = 32.0 bits (71), Expect = 9.2
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -1

Query: 8652 KNIHVVDLIAFGVLRVLVLAGCVL*FFGFGRDIPLSHFVVQRLVLALEGIAC 8497
            +N+H +DL        +V AG  +    F  D+P +H ++ RLV  + G+AC
Sbjct: 337  RNMHRLDLRMVASFAFIVFAGVSVWNSTFTLDVPFNHVILPRLVQGI-GVAC 387



>gi|134294178|ref|YP_001117913.1| drug resistance transporter,
            EmrB/QacA subfamily [Burkholderia vietnamiensis G4]
          Length = 520

 Score = 32.0 bits (71), Expect = 9.2
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -1

Query: 8652 KNIHVVDLIAFGVLRVLVLAGCVL*FFGFGRDIPLSHFVVQRLVLALEGIAC 8497
            +N+H +DL        +V AG  +    F  D+P +H ++ RLV  + G+AC
Sbjct: 337  RNMHRLDLRMVASFAFIVFAGVSVWNSTFTLDVPFNHVILPRLVQGI-GVAC 387




  Database: /dbase/web_blast/db/Efflux_Pump.fasta
    Posted date:  Aug 12, 2007 10:30 PM
  Number of letters in database: 14,206,867
  Number of sequences in database:  24,506
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 190,297,952
Number of Sequences: 24506
Number of extensions: 3704862
Number of successful extensions: 9943
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 7628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9939
length of database: 14,206,867
effective HSP length: 119
effective length of database: 11,290,653
effective search space used: 34549398180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)